{ "_id": "6ac0c7e291601a2ad2998c50", "Package": "nhm", "Type": "Package", "Title": "Non-Homogeneous Markov and Hidden Markov Multistate Models", "Version": "0.1.2", "Authors@R": "person(\"Andrew\", \"Titman\", role=c(\"aut\", \"cre\"),\nemail = \"a.titman@lancaster.ac.uk\")", "Maintainer": "Andrew Titman ", "Description": "Fits non-homogeneous Markov multistate models and\nmisclassification-type hidden Markov models in continuous time\nto intermittently observed data. Implements the methods in\nTitman (2011) . Uses\ndirect numerical solution of the Kolmogorov forward equations\nto calculate the transition probabilities.", "License": "GPL (>= 2)", "Encoding": "UTF-8", "LazyData": "true", "VignetteBuilder": "R.rsp", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-10-03 09:09:41 UTC", "User": "root" }, "Author": "Andrew Titman [aut, cre]", "Repository": "https://andrewtitman.r-universe.dev", "Date/Publication": "2025-08-31 21:30:02 UTC", "RemoteUrl": "https://github.com/cran/nhm", "RemoteRef": "HEAD", "RemoteSha": "9cfd036b39e890103950b1d7af6a23d92f9929d7", "_user": "andrewtitman", "_type": "src", "_file": "nhm_0.1.2.tar.gz", "_fileid": "https://r2.ropensci.org/f219a6262dcc07c70547a0b6160eff8ca8359808a5bbb7634e4229d6134106ba", "_filesize": 646060, "_sha256": "f219a6262dcc07c70547a0b6160eff8ca8359808a5bbb7634e4229d6134106ba", "_expires": "2027-01-11T09:16:16.000Z", "_created": "2026-10-03T09:09:41.000Z", "_published": "2026-10-03T09:16:18.457Z", "_jobs": [ { "job": 111171936106, "time": 133, "config": "linux-devel-arm64", "r": "4.7.0", "check": "NOTE", "artifact": "11270550099" }, { "job": 111171936066, "time": 148, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "11269269890" }, { "job": 111171936108, "time": 103, "config": "linux-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "11269864288" }, { "job": 111171936086, "time": 110, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11269779198" }, { "job": 111171936078, "time": 199, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "11270555171" }, { "job": 111171936029, "time": 284, "config": "macos-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "11269999179" }, { "job": 111171936077, "time": 181, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "11269159906" }, { "job": 111171936031, "time": 317, "config": "macos-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11269789714" }, { "job": 111171438258, "time": 183, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "11269319612" }, { "job": 111171935988, "time": 94, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "11269694626" }, { "job": 111171936137, "time": 337, "config": "windows-devel-arm64", "r": "4.7.0", "check": "NOTE", "artifact": "11270099103" }, { "job": 111171936136, "time": 115, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "11270300203" }, { "job": 111171936111, "time": 89, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "11270260276" }, { "job": 111171936099, "time": 346, "config": "windows-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "11270775054" }, { "job": 111171936103, "time": 81, "config": "windows-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11269299686" } ], "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/andrewtitman/actions/runs/37111939095", "_status": "success", "_upstream": "https://github.com/cran/nhm", "_commit": { "id": "9cfd036b39e890103950b1d7af6a23d92f9929d7", "author": "Andrew Titman ", "committer": "cran-robot ", "message": "version 0.1.2\n", "time": 1756675802 }, "_maintainer": { "name": "Andrew Titman", "email": "a.titman@lancaster.ac.uk", "login": "andrewtitman", "description": "", "uuid": 54114473 }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "stats", "role": "Imports" }, { "package": "deSolve", "role": "Imports" }, { "package": "maxLik", "role": "Imports" }, { "package": "mvtnorm", "role": "Imports" }, { "package": "msm", "role": "Suggests" }, { "package": "parallel", "role": "Suggests" }, { "package": "splines", "role": "Suggests" }, { "package": "R.rsp", "role": "Suggests" } ], "_owner": "cran", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 1, "_contributors": [ { "user": "andrewtitman", "count": 3, "uuid": 54114473 } ], "_userbio": { "uuid": 54114473, "type": "user", "name": "andrewtitman", "followers": 2 }, "_downloads": { "count": 303, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/nhm" }, "_searchresults": 4, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/NEWS.html", "extra/NEWS.txt", "extra/nhm.html" ], "_realowner": "andrewtitman", "_cranurl": false, "_releases": [ { "version": "0.1.0", "date": "2019-10-11" }, { "version": "0.1.1", "date": "2023-11-02" }, { "version": "0.1.2", "date": "2025-08-31" } ], "_exports": [ "ematrix.nhm", "expected_hitting_time", "initialprob.nhm", "model.nhm", "nhm", "nhm.control", "qmatrix.nhm", "state_life_expectancy", "state_occupation_probability.nhm" ], "_datasets": [ { "name": "example_data1", "title": "Example of data on a progressive 4 state process", "object": "example_data1", "class": [ "data.frame" ], "fields": [ "state", "time", "id", "cov1", "cov2" ], "rows": 3861, "table": true, "tojson": true }, { "name": "example_data2", "title": "Example of data on a progressive 4 state process with state misclassification", "object": "example_data2", "class": [ "data.frame" ], "fields": [ "state", "time", "id", "cov1", "cov2" ], "rows": 3864, "table": true, "tojson": true } ], "_help": [ { "page": "ematrix.nhm", "title": "Compute the misclassification probability matrix from a fitted nhm model", "topics": [ "ematrix.nhm" ] }, { "page": "example_data1", "title": "Example of data on a progressive 4 state process", "topics": [ "example_data1" ] }, { "page": "example_data2", "title": "Example of data on a progressive 4 state process with state misclassification", "topics": [ "example_data2" ] }, { "page": "expected_hitting_time", "title": "Compute the estimated hitting time for a state of a progressive multi-state model.", "topics": [ "expected_hitting_time" ] }, { "page": "initialprob.nhm", "title": "Compute the initial probability vector from a fitted nhm model", "topics": [ "initialprob.nhm" ] }, { "page": "model.nhm", "title": "Model object set up for non-homogeneous Markov models", "topics": [ "model.nhm" ] }, { "page": "nhm", "title": "Fit a non-homogeneous Markov model using maximum likelihood", "topics": [ "nhm" ] }, { "page": "nhm.control", "title": "Ancillary arguments for controlling nhm fits", "topics": [ "nhm.control" ] }, { "page": "plot.nhm", "title": "Plot transition probabilities, intensities or state occupation probabilities from a fitted nhm model.", "topics": [ "plot.nhm" ] }, { "page": "predict.nhm", "title": "Compute transition probabilities from a fitted nhm model", "topics": [ "predict.nhm" ] }, { "page": "print.nhm_score", "title": "Print output from a score test of a nhm object", "topics": [ "print.nhm_score" ] }, { "page": "qmatrix.nhm", "title": "Compute transition intensities from a fitted nhm model", "topics": [ "qmatrix.nhm" ] }, { "page": "state_life_expectancy", "title": "State-specific life expectancies and quality-adjusted life years", "topics": [ "state_life_expectancy" ] }, { "page": "state_occupation_probability.nhm", "title": "Compute state occupation probabilities from a fitted nhm model", "topics": [ "state_occupation_probability.nhm" ] } ], "_rundeps": [ "deSolve", "digest", "generics", "lattice", "maxLik", "miscTools", "mvtnorm", "sandwich", "zoo" ], "_vignettes": [ { "source": "nhm-manual.tex", "filename": "nhm-manual.pdf", "title": "User guide to nhm", "engine": "R.rsp::tex", "headings": [], "created": "2023-11-02 22:30:49", "modified": "2025-08-31 21:30:02", "commits": 2 } ], "_score": 2, "_indexed": true, "_nocasepkg": "nhm", "_universes": [ "andrewtitman" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.1.2", "date": "2026-10-03T09:12:02.000Z", "distro": "resolute", "arch": "aarch64", "commit": "9cfd036b39e890103950b1d7af6a23d92f9929d7", "fileid": "https://r2.ropensci.org/da2ee0efddea414fbf62779621e133e3788dfe1238b3f90ba4c16c59acc2e4eb", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/andrewtitman/actions/runs/37111939095" }, { "r": "4.7.0", "os": "linux", "version": "0.1.2", "date": "2026-10-03T09:12:07.000Z", "distro": "resolute", "arch": "x86_64", "commit": "9cfd036b39e890103950b1d7af6a23d92f9929d7", "fileid": "https://r2.ropensci.org/bff25ddbf29c6847a843a01bf2d359aab963fd51466068ad1226313060aff362", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/andrewtitman/actions/runs/37111939095" }, { "r": "4.6.1", "os": "linux", "version": "0.1.2", "date": "2026-10-03T09:11:35.000Z", "distro": "resolute", "arch": "aarch64", "commit": "9cfd036b39e890103950b1d7af6a23d92f9929d7", "fileid": "https://r2.ropensci.org/ccc09d5453b71b6dd55759f801f0314ae349c42bb966e6dc6c2080eff51d5696", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/andrewtitman/actions/runs/37111939095" }, { "r": "4.6.1", "os": "linux", "version": "0.1.2", "date": "2026-10-03T09:11:32.000Z", "distro": "resolute", "arch": "x86_64", "commit": "9cfd036b39e890103950b1d7af6a23d92f9929d7", "fileid": "https://r2.ropensci.org/eeb6e85b1e1bb9538ef55ad161e7114eac98b47192e11b1480d7baed9927b3f8", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/andrewtitman/actions/runs/37111939095" }, { "r": "4.5.3", "os": "mac", "version": "0.1.2", "date": "2026-10-03T09:12:26.000Z", "arch": "aarch64", "commit": "9cfd036b39e890103950b1d7af6a23d92f9929d7", "fileid": "https://r2.ropensci.org/ccf27c04cf61870f4ec3f8b472cfcc492420ced790afc4edee43f461b4866b27", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/andrewtitman/actions/runs/37111939095" }, { "r": "4.5.3", "os": "mac", "version": "0.1.2", "date": "2026-10-03T09:13:51.000Z", "arch": "x86_64", "commit": "9cfd036b39e890103950b1d7af6a23d92f9929d7", "fileid": "https://r2.ropensci.org/f6ce4ca8b717272d23d5b515bd25d7176e2542930ab8bed3210e5fa8b06aea56", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/andrewtitman/actions/runs/37111939095" }, { "r": "4.6.1", "os": "mac", "version": "0.1.2", "date": "2026-10-03T09:12:14.000Z", "arch": "aarch64", "commit": "9cfd036b39e890103950b1d7af6a23d92f9929d7", "fileid": "https://r2.ropensci.org/02354f64e65b0a1e5906a3085d1cd319b807b63cab8a8b6bacda6a0095d2cfcd", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/andrewtitman/actions/runs/37111939095" }, { "r": "4.6.1", "os": "mac", "version": "0.1.2", "date": "2026-10-03T09:14:06.000Z", "arch": "x86_64", "commit": "9cfd036b39e890103950b1d7af6a23d92f9929d7", "fileid": "https://r2.ropensci.org/3d3bf11e09533912d34b76d0a61f81582f582a9382cf4f18cc68fd9e5a5aae74", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/andrewtitman/actions/runs/37111939095" }, { "r": "4.6.0", "os": "wasm", "version": "0.1.2", "date": "2026-10-03T09:11:40.000Z", "arch": "emscripten", "commit": "9cfd036b39e890103950b1d7af6a23d92f9929d7", "fileid": "https://r2.ropensci.org/dbfd03d3e92bac06666c2a4cfdb5c3b3a4ccb2cc4fc86cf41536651b3775dac7", "status": "success", "buildurl": "https://github.com/r-universe/andrewtitman/actions/runs/37111939095" }, { "r": "4.7.0", "os": "win", "version": "0.1.2", "date": "2026-10-03T09:14:47.000Z", "arch": "aarch64", "commit": "9cfd036b39e890103950b1d7af6a23d92f9929d7", "fileid": "https://r2.ropensci.org/f93c929b7923d27e0ccd2acf6b645d072c59928385e6aa32c4b9121279d53dae", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/andrewtitman/actions/runs/37111939095" }, { "r": "4.7.0", "os": "win", "version": "0.1.2", "date": "2026-10-03T09:10:47.000Z", "arch": "x86_64", "commit": "9cfd036b39e890103950b1d7af6a23d92f9929d7", "fileid": "https://r2.ropensci.org/7a75738ce546273cd5180cd5cdf8390815bd4badfc8611c3dc0032585c5abfa2", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/andrewtitman/actions/runs/37111939095" }, { "r": "4.5.3", "os": "win", "version": "0.1.2", "date": "2026-10-03T09:10:56.000Z", "arch": "x86_64", "commit": "9cfd036b39e890103950b1d7af6a23d92f9929d7", "fileid": "https://r2.ropensci.org/7fc9ed59964421318bdaf77fdd6dcc9e8a52db9b4879e70405d80cc501f89e56", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/andrewtitman/actions/runs/37111939095" }, { "r": "4.6.1", "os": "win", "version": "0.1.2", "date": "2026-10-03T09:14:48.000Z", "arch": "aarch64", "commit": "9cfd036b39e890103950b1d7af6a23d92f9929d7", "fileid": "https://r2.ropensci.org/c2f6da88481b165bbf7afb384344025a0fd5be8ed04efd3c31e455724e95a0a9", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/andrewtitman/actions/runs/37111939095" }, { "r": "4.6.1", "os": "win", "version": "0.1.2", "date": "2026-10-03T09:10:52.000Z", "arch": "x86_64", "commit": "9cfd036b39e890103950b1d7af6a23d92f9929d7", "fileid": "https://r2.ropensci.org/6d1d49fa534790232153c3aad515dc481c4dce076d2f6cd669c48ff2490b4f28", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/andrewtitman/actions/runs/37111939095" } ] }